Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015934144.1_cds_XP_016480297.1_71750
CDS Infomation

[gene=LOC107801480] [db_xref=GeneID:107801480] [protein=guanine nucleotide exchange factor SPIKE 1-like isoform X2] [protein_id=XP_016480297.1] [location=complement(join(9573..9635,9845..10036,10115..10282,10718..10987,12389..12697,14319..14456,14569..14666,14793..14848,14928..15040,15120..15247,16061..16223,22685..22765))] [gbkey=CDS]
Sequence

ATGGAAACTTCATCTAGTGGATATCGGTTTCGGAGAATACCACGCCACTCCTTTGCTGGT
TCTGTGAATTTAGATCCCCTGCTTGATGAAAATTTGGAGCAGTGGCCACATTTAAACGAA
CTTGTGCAATGCTACAGAACCGACTGGGTAAAAGATGAGAACAAGTATGGTCACTATGAA
AGCGTCAGCCCAGCTTCATTTCAGAATCAGATATACGAGGGTCCTGATACTGATATTGAA
ACAGAGATGCATCTTGCAAATGCTAGGCGACCTAAGATTGAGGATTCAATTGATGATGAA
ATCCCTAGCACTTCTGGGACACAACTCTCTGAAACTAATTTCTCTGACCTCTCGAACGCC
AAAGTCTCTAAGCATTTTGGTGAATCCCCCCTACCGACTTATGAACCAGTTTTTGACTGG
GAAAATGAAAGGTCACTAATATTTGGGCAAAGGATTCCAGAAGCTCATATGTCCCAGTAT
ACGAGTGGTCTGAAGATTGCCGTGAAAGTCCTATCATTGTCATTTCAAGCTGGACTTGTT
GAGCCGTTTTATGGCACAATTTGTTTATATAATAGGGAGCGAAGAGAAAAACTTTCAGAG
GATTTTATTTTCCATATATTGCCTACCGAAATGCAAGAAGCAAGCAGTTCCTGTGAACGG
CGTTGTATTTTTCATCTTGATGCTCCATCAGCATCTATTTGTCTGCTAATCCAACTAGAA
AAGCCTGCAACTGAAGAAGGTGGAGTGTCTCCTTCTGTTTATTCACGAAAGGAACCAGTT
CATCTGACAGAGAGAGAGAAACAGAAGCTACAAGTGTGGTCGCGGATCATGCCTTATAAG
GAGTCCTTTGCCTGGGCCATCATTCCACTCTTTGATAGTAACATTACTTCTGTTGCTGGC
TCTGCTTCTCCCAGCAGTCCTCTTGCTCCAAGCGTTTCAGCTTCAAGTTCTCAAGAGGGT
GTCACTGATCCGGTTTCAAAAATTACAGCTGATGGAAAGCTTGGTTATTCAAATGGGAAC
TCTATTGTGGTCGAAGTGTCTAACTTAAATAAAGTCAAAGAAGGATATACCGAGGAATCA
CTCCAGGATCCAAAGCGAAAGGTTCATAAACCAGTAAAAGGTGTCTTGAAATTGGAAATC
GAAAAGCTGCCAGCTAGCTCTGCTGAAGTTGAAAATACTTTGGAGAGTGGGAGTCTGGCT
TATGATTCTCTTGATCATGGAGACCATTTGACTGATTCGGCTTCTATGAAACGCCCTACT
AATGGTTCCTTTTCTAAGTCTAAATCCTTTGAGATGAAAGAGCTTGTTCGGAATGGTTCA
ATTGCTCACGAAAATGTGGAAAATTCTGCTGATGATTTTGAAGCTTTTGACTTCCGCACG
ACGACAAGAAATGAACCTTTCTTGCAGCTCTTTCACTGCTTATATGCCTACCCCTTGACT
GTTAGTATGAGTCGGAAAAGAAACGTGTTTATACGTGTTGAACTGAGAAAGGACGACACA
GACGTTCGGAAACCACCTCTAGAGGCTATGCATTCAAGGGAACCAGGTGTACCACTTCAG
AAATGGTCACACACACAAGTTGCTGTTGGGACAAGGGTCGCCAGCTACCATGACGAGATC
AAAATTTCTTTGCCTGCTATTTGGACACCATTGCATCACCTTTTGTTTACTTTCTATCAT
GTTGATCTTCAAACAAAACTTGAAGCCCCAAAGCCGGTGGTAATTGGATACGCTTCACTT
CCATTGTCCACACATGCGCAGTATGTTTCTATTCTTTGA

Peptide Sequence

PEP ID

XP_016480297.1
PEP Infomation

PREDICTED: guanine nucleotide exchange factor SPIKE 1-like isoform X2 [Nicotiana tabacum]
Sequence

METSSSGYRFRRIPRHSFAGSVNLDPLLDENLEQWPHLNELVQCYRTDWVKDENKYGHYE
SVSPASFQNQIYEGPDTDIETEMHLANARRPKIEDSIDDEIPSTSGTQLSETNFSDLSNA
KVSKHFGESPLPTYEPVFDWENERSLIFGQRIPEAHMSQYTSGLKIAVKVLSLSFQAGLV
EPFYGTICLYNRERREKLSEDFIFHILPTEMQEASSSCERRCIFHLDAPSASICLLIQLE
KPATEEGGVSPSVYSRKEPVHLTEREKQKLQVWSRIMPYKESFAWAIIPLFDSNITSVAG
SASPSSPLAPSVSASSSQEGVTDPVSKITADGKLGYSNGNSIVVEVSNLNKVKEGYTEES
LQDPKRKVHKPVKGVLKLEIEKLPASSAEVENTLESGSLAYDSLDHGDHLTDSASMKRPT
NGSFSKSKSFEMKELVRNGSIAHENVENSADDFEAFDFRTTTRNEPFLQLFHCLYAYPLT
VSMSRKRNVFIRVELRKDDTDVRKPPLEAMHSREPGVPLQKWSHTQVAVGTRVASYHDEI
KISLPAIWTPLHHLLFTFYHVDLQTKLEAPKPVVIGYASLPLSTHAQYVSIL

Transcript Sequence

Gene sequence data has not been registered.